1 |
V-RB-RHIRD |
Agrobacterium tumefaciens |
|
- |
|
|
truncated |
2 |
V-intervening-SYNTH |
Synthetic |
180 |
329-508 |
|
|
|
3 |
P-usp-VICFA |
Vicia faba |
684 |
509-1192 |
Promoter of USP. Bäumlein, H. et al. (1991). Molecular and General Genetics, 225, 459-467 |
|
|
4 |
I-At1g01170 |
Arabidopsis thaliana |
252 |
1193-1444 |
Intron-containing 5' UTR of locus At1g01170; Nakabayashi, K. et al. (2005). Plant Journal 41, 697-709 |
|
|
5 |
V-intervening-SYNTH |
Synthetic |
2 |
1445-1446 |
|
|
|
6 |
CS-detla6E-PHYPA |
Physcomitrella patens |
1173 |
1147-2319 |
delta6 elongase gene; Zank, T.K. et al (2002). Plant Journal 31, 255-268 |
Altered fatty acids and oils |
|
7 |
T-35S-CaMV |
Cauliflower mosaic virus |
216 |
2320-2535 |
3' untranslated region (3' UTR) of the 35S gene from Cauliflower mosaic virus. Gardner et al. (1981). Nucleic Acids Res, 9:2871-2888 |
|
|
8 |
V-intervening-SYNTH |
Synthetic |
92 |
2536-2627 |
|
|
|
9 |
P-cnl1-LINUS |
Linum usitatissimum |
1064 |
2628-3691 |
Promoter of the conlinin1 gene. Truska et al. (2003). Plant Phys and Biochem, 41,141-147 |
|
|
10 |
I-At5g63190 |
Arabidopsis thaliana |
377 |
3692-4068 |
Intron-containing 5' UTR of locus At5g63190; Wang, Y. et al. (2008). Plant Physiology 148, 1201-1211 |
|
|
11 |
V-intervening-SYNTH |
Synthetic |
3 |
4069-4071 |
|
|
|
12 |
CS-delta5D-THRSP |
Thraustochytrium sp. |
1320 |
4072-5391 |
delta5 desaturase gene; Qiu, X. et al. (2001). Journal of Biological Chemistry 276, 31561-31566 |
Altered fatty acids and oils |
|
13 |
T-ocs-RHIRD |
Agrobacterium tumefaciens |
192 |
5392-5583 |
3' untranslated region (3' UTR) of the octopine synthase gene from Agrobacterium tumefaciens Ti-Plasmid. DeGreve et al. (1982) J Mol Appl Genet. 1(6):499-511 |
|
|
14 |
V-intervening-SYNTH |
Synthetic |
135 |
5584-5718 |
|
|
|
15 |
P-sbp-VICFA |
Vicia faba |
1799 |
5719-7517 |
Promoter of sucrose binding related protein. Grimes, H.D. et al. (1992). Plant Cell 4, 1561-1574 |
|
|
16 |
I-At1g65090 |
Arabidopsis thaliana |
455 |
7518-7972 |
Intron-containing 5' UTR of locus At1g65090; Braybrook, S.A. et al. (2006). PNAS 103, 3468-3473 |
|
|
17 |
V-intervening-SYNTH |
Synthetic |
9 |
7973-7981 |
|
|
|
18 |
CS-delta6D-OSTTA |
Ostreococcus tauri |
1371 |
7982-9352 |
delta6 desaturase gene; Domergue, F. (2005). Biochemical Journal 389, 483-490 |
Altered fatty acids and oils |
|
19 |
V-intervening-SYNTH |
Synthetic |
27 |
9353-9379 |
|
|
|
20 |
T-CDI-SOLTU |
Solanum tuberosum |
235 |
9380-9614 |
Terminator of cathepsin D inhibitor gene; Hannapel, D.J. et al. (1993). Plant Physiology 101, 703 |
|
|
21 |
V-intervening-SYNTH |
Synthetic |
78 |
9615-9692 |
|
|
|
22 |
P-pxr-LINUS |
Linum usitatissimum |
1727 |
9693-11419 |
Promoter of peroxiredoxin. Duwenig, E. and Loyall, L.P. (2006). Patent WO2006089950 A2, WIPO |
|
|
23 |
I-At1g62290 |
Arabidopsis thaliana |
846 |
11420-12265 |
Intron-containing 5' UTR of locus At1g62290 (aspartyl protease family protein); Chen, X. et al. (2002). Eur J Biochem 269, 4675-4684 |
|
|
24 |
V-intervening-SYNTH |
Synthetic |
13 |
12266-12278 |
|
|
|
25 |
CS-delta6E-THAPS |
Thalassiosira pseudonana |
819 |
12279-13097 |
delta6 elongase gene; Ambrust, E.V. et al. (2004). Science 306, 79-86 |
Altered fatty acids and oils |
|
26 |
V-intervening-SYNTH |
Synthetic |
55 |
13098-13152 |
|
|
|
27 |
T-pxr-ARATH |
Arabidopsis thaliana |
400 |
13153-13552 |
Terminator of peroxidin. Haslekås, C. et al. (1998). Plant Molecular Biology 36, 833-845 |
|
|
28 |
V-intervening-SYNTH |
Synthetic |
169 |
13553-13721 |
|
|
|
29 |
P-napA-BRANA |
Brassica napus |
664 |
13722-14385 |
Promoter of seed storage protein napin A/B. Ellerström, M. (1996). Plant Molecular Biology 32, 1019-1027 |
|
|
30 |
I-At5g63190 |
Arabidopsis thaliana |
377 |
14386-14762 |
Intron-containing 5' UTR of locus At5g63190; Wang, Y. et al. (2008). Plant Physiology 148, 1201-1211 |
|
|
31 |
V-intervening-SYNTH |
Synthetic |
6 |
14763-14768 |
|
|
|
32 |
CS-delta12D-PHYSP |
Phytophthora sojae |
1197 |
14769-15965 |
delta12 desaturase gene; Cirpus, P. and Bauer, J. (2006). Patent WO2006100241 A2, WIPO |
Altered fatty acids and oils |
sequence contains a cytosine to adenine nucleotide change which results in a phenylalanine to leucine amino acid substitution (F83L) in the delta-12D protein. |
33 |
V-intervening-SYNTH |
Synthetic |
18 |
15966-15983 |
|
|
|
34 |
T-rbcS_E9-PEA |
Pisum sativum |
558 |
15984-16541 |
3' untranslated region (3' UTR) f the rinulose-1,5-bisphosphate carboxylase, small subunit (rbcS E9) gene. Coruzzi et al. (1984) EMBO J. 3:1671-1679 |
|
|
35 |
V-intervening-SYNTH |
Synthetic |
92 |
16542-16633 |
|
|
|
36 |
P-setl-BRANA |
Brassica napus |
1234 |
16634-17867 |
Promoter of SETL. Bauer, J. and Senger, T. (2010). Patent WO2010000708, WIPO |
|
|
37 |
V-intervening-SYNTH |
Synthetic |
2 |
17868-17869 |
|
|
|
38 |
CS-omega3D-PYTIR |
Pythium irregulare |
1092 |
17870-18961 |
omega3 desaturase gene; Cheng, B. et al. (2010). Transgenic Research 19, 221-229 |
Altered fatty acids and oils |
|
39 |
V-intervening-SYNTH |
Synthetic |
21 |
18962-18982 |
|
|
|
40 |
t-setl-BRANA |
Brassica napus |
614 |
18983-19596 |
Terminator of SETL. Bauer, J. and Senger, T. (2010). Patent WO2010000708, WIPO |
|
|
41 |
V-intervening-SYNTH |
Synthetic |
78 |
19597-19674 |
|
|
|
42 |
P-usp-VICFA |
Vicia faba |
684 |
19675-20358 |
Promoter of USP. Bäumlein, H. et al. (1991). Molecular and General Genetics, 225, 459-467 |
|
|
43 |
I-At1g01170 |
Arabidopsis thaliana |
252 |
20359-20610 |
Intron-containing 5' UTR of locus At1g01170; Nakabayashi, K. et al. (2005). Plant Journal 41, 697-709 |
|
|
44 |
V-intervening-SYNTH |
Synthetic |
10 |
20611-20620 |
|
|
|
45 |
CS-omega3D-PHYIT |
Phytophthora infestans |
1086 |
20621-21706 |
omega3 desaturase gene; Wu, G. et al. (2005). Nature Biotechnology 23, 1013-1017 |
Altered fatty acids and oils |
|
46 |
V-intervening-SYNTH |
Synthetic |
8 |
21707-21714 |
|
|
|
47 |
T-35S-CaMV |
Cauliflower mosaic virus |
216 |
21715-21930 |
3' untranslated region (3' UTR) of the 35S gene from Cauliflower mosaic virus. Gardner et al. (1981). Nucleic Acids Res, 9:2871-2888 |
|
|
48 |
V-intervening-SYNTH |
Synthetic |
135 |
21931-22065 |
|
|
|
49 |
P-setl-BRANA |
Brassica napus |
1234 |
22066-23299 |
Promoter of SETL. Bauer, J. and Senger, T. (2010). Patent WO2010000708, WIPO |
|
|
50 |
V-intervening-SYNTH |
Synthetic |
2 |
23300-23301 |
|
|
|
51 |
CS-delta5D-THRSP |
Thraustochytrium sp. |
1320 |
23302-24621 |
delta5 desaturase gene; Qiu, X. et al. (2001). Journal of Biological Chemistry 276, 31561-31566 |
Altered fatty acids and oils |
|
52 |
V-intervening-SYNTH |
Synthetic |
21 |
24622-24642 |
|
|
|
53 |
t-setl-BRANA |
Brassica napus |
614 |
24643-25256 |
Terminator of SETL. Bauer, J. and Senger, T. (2010). Patent WO2010000708, WIPO |
|
|
54 |
V-intervening-SYNTH |
Synthetic |
146 |
25257-25402 |
|
|
|
55 |
P-arc5a-PHAVU |
Phaseolus vulgaris |
1151 |
25403-26553 |
Promoter of arcelin; Goossens, A. et al. (1999). Plant Physiology 120, 1095-1104 |
|
|
56 |
V-intervening-SYNTH |
Synthetic |
10 |
26554-26563 |
|
|
|
57 |
CS-delta4D-THRSP |
Thraustochytrium sp. |
1560 |
26564-28123 |
delta4 desaturase gene; Qiu, X. et al. (2001). Journal of Biological Chemistry 276, 31561-31566 |
Altered fatty acids and oils |
|
58 |
V-intervening-SYNTH |
Synthetic |
13 |
28124-28136 |
|
|
|
59 |
T-arc5a-PHAVU |
Phaseolus vulgaris |
600 |
28137-28736 |
Terminator of arcelin; Goossens, A. et al. (1999). Plant Physiology 120, 1095-1104 |
|
|
60 |
V-intervening-SYNTH |
Synthetic |
92 |
28737-28828 |
|
|
|
61 |
P-pxr-LINUS |
Linum usitatissimum |
1727 |
28829-30555 |
Promoter of peroxiredoxin. Duwenig, E. and Loyall, L.P. (2006). Patent WO2006089950 A2, WIPO |
|
sequence contains a cytosine to adenine nucleotide change; this nucleotide change does not result in an amino acid substitution. |
62 |
I-AGO4 |
Arabidopsis thaliana |
758 |
30556-31313 |
Intron-containing 5' UTR of gene AGO4; Zilberman, D. et al. (2003). Science 299, 716-719 |
|
|
63 |
V-intervening-SYNTH |
Synthetic |
15 |
31314-31328 |
|
|
|
64 |
CS-omega3D-PYTIR |
Pythium irregulare |
1092 |
31329-32420 |
omega3 desaturase gene; Cheng, B. et al. (2010). Transgenic Research 19, 221-229 |
Altered fatty acids and oils |
|
65 |
V-intervening-SYNTH |
Synthetic |
56 |
32421-32476 |
|
|
|
66 |
T-pxr-ARATH |
Arabidopsis thaliana |
400 |
32477-32876 |
Terminator of peroxidin. Haslekås, C. et al. (1998). Plant Molecular Biology 36, 833-845 |
|
|
67 |
V-intervening-SYNTH |
Synthetic |
135 |
32877-33011 |
|
|
|
68 |
P-cnl1-LINUS |
Linum usitatissimum |
1064 |
33012-34075 |
Promoter of the conlinin1 gene. Truska et al. (2003). Plant Phys and Biochem, 41,141-147 |
|
|
69 |
I-At1g65090 |
Arabidopsis thaliana |
455 |
34076-34530 |
Intron-containing 5' UTR of locus At1g65090; Braybrook, S.A. et al. (2006). PNAS 103, 3468-3473 |
|
|
70 |
V-intervening-SYNTH |
Synthetic |
9 |
34531-34539 |
|
|
|
71 |
CS-delta4D-DIALT |
Diacronema lutheri |
1338 |
34540-35877 |
delta4 desaturase gene from Diacronema Lutheri (also known as Pavlova lutheri); Tonon, T. et al. (2003). FEBS Letters 553, 440-444 |
Altered fatty acids and oils |
|
72 |
V-intervening-SYNTH |
Synthetic |
21 |
35878-35898 |
|
|
|
73 |
T-ocs-RHIRD |
Agrobacterium tumefaciens |
192 |
35899-36090 |
3' untranslated region (3' UTR) of the octopine synthase gene from Agrobacterium tumefaciens Ti-Plasmid. DeGreve et al. (1982) J Mol Appl Genet. 1(6):499-511 |
|
|
74 |
V-intervening-SYNTH |
Synthetic |
193 |
36091-36283 |
|
|
|
75 |
P-fae1-BRANA |
Brassica napus |
1430 |
36284-37713 |
Promoter of fatty acid elongase. Han, J. et al. (2001). Plant Molecular Biology 46, 229-239 |
|
|
76 |
I-At1g62290 |
Arabidopsis thaliana |
847 |
37714-38560 |
Intron-containing 5' UTR of locus At1g62290 (aspartyl protease family protein); Chen, X. et al. (2002). Eur J Biochem 269, 4675-4684 |
|
|
77 |
V-intervening-SYNTH |
Synthetic |
7 |
38561-38567 |
|
|
|
78 |
CS-delta5E-OSTTA |
Ostreococcus tauri |
903 |
38568-39470 |
delta5 elongase gene; Zank, T. et al. (2005). Patent WO2005012316 A2, WIPO |
Altered fatty acids and oils |
|
79 |
V-intervening-SYNTH |
Synthetic |
16 |
39471-39486 |
|
|
|
80 |
T-fae1-ARATH |
Arabidopsis thaliana |
400 |
39487-39886 |
Terminator of fatty acid elongase. Rossak, M. et al. (2001). Plant Molecular Biology 46, 717-725 |
|
|
82 |
V-intervening-SYNTH |
Synthetic |
118 |
39887-40004 |
|
|
|
84 |
P-ubi4-PETCR |
Petroselinum crispum |
394 |
40005-40398 |
Promoter of ubiquitin. Kawalleck, P. et al. (1993). Plant Molecular Biology 21, 673-684 |
|
|
86 |
I-ubi4-PETCR |
Petroselinum crispum |
588 |
40399-40986 |
Intron of ubiquitin; Kawalleck, P. et al. (1993). Plant Molecular Biology 21, 673-684 |
|
|
87 |
V-intervening-SYNTH |
Synthetic |
7 |
40987-40993 |
|
|
|
89 |
CS-ahas-ARATH |
Arabidopsis thaliana |
2013 |
40994-43006 |
Acetohydroxy acid synthase gene (mutated) from Arabidopsis thaliana. Chang and Duggleby (1998). Biochem J, 333, 765-777 |
ALS/AHAS inhibitor tolerance |
|
91 |
T-ahas-ARATH |
Arabidopsis thaliana |
780 |
43007-43786 |
3' untranslated region (3' UTR) of the acetohydroxy acid synthase gene. Mazur et al. (1987) Plant Physiol, 85(4): 1110-1117 |
|
|
92 |
V-intervening-SYNTH |
Synthetic |
88 |
43787-43874 |
|
|
|
93 |
V-LB-RHIRD |
Agrobacterium tumefaciens |
136 |
43875-44010 |
|
|
truncated |